PPP
jody

Contents:

  • Introduction
  • Installation
  • Usage and Examples
  • PPP Core Functions
  • PPP Input File Generators
    • vcf_format_conversions.py: VCF to Plink/EIGENSTRAT
    • vcf_to_ima.py: VCF to IMa Conversion Function
    • vcf_to_treemix.py: VCF to treemix Conversion Function
    • vcf_to_gphocs.py: VCF to GPhocs Conversion Function
    • vcf_to_fastsimcoal.py: VCF to fastsimcoal Conversion Function
    • vcf_to_dadi.py: VCF to dadi Conversion Function
  • PPP Analyses
  • PPP Utilities
  • Model File and Creation
  • Development
  • Contact Us
  • Citations
PPP
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  • PPP Input File Generators
  • Edit on GitHub

PPP Input File GeneratorsΒΆ

For several programs that implement analyses of population genomic variation, PPP provides scripts to generate input files from VCF files.

  • vcf_format_conversions.py: VCF to Plink/EIGENSTRAT
  • vcf_to_ima.py: VCF to IMa Conversion Function
  • vcf_to_treemix.py: VCF to treemix Conversion Function
  • vcf_to_gphocs.py: VCF to GPhocs Conversion Function
  • vcf_to_fastsimcoal.py: VCF to fastsimcoal Conversion Function
  • vcf_to_dadi.py: VCF to dadi Conversion Function
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© Copyright 2020, PPP Development Team. This material is based upon work supported by the National Science Foundation under Grant Number (NSF ABI 1564659 to Arun Sethuraman and Jody Hey) Revision d58570ba.

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