PPP Analyses

These functions were developed to perform the actual population genetic analyses for the PPP. Please note that each functions was designed to use a specific file format and the use of a conversion function may be required. See each function for more details.

• eigenstrat_fstats.py: F-statistics Analysis
• admixture.py: Admixture Analysis
• ima3_wrapper.py: IMa3 Analysis
• plink_linkage_disequilibrium.py: Linkage Disequilibrium Analysis
• vcf_to_sfs.py: Site Frequency Spectrum generator